PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g42400.3
Common NameLOC4346157, Os08g0535800, OsJ_28085, OSJNBa0033D24.25, OSNPB_080535800, P0665C04.6
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 165aa    MW: 17431.3 Da    PI: 10.8363
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g42400.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.12.6e-30191551128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdke 91 
                       lppGfrFhPtdeelvv+yL++k+ g +l++  vi+++ +++k++Pwd+p +  +++ + yfF+ r  ++ +g+r++ +++ g Wk a g+dk+
  LOC_Os08g42400.3  19 LPPGFRFHPTDEELVVQYLRRKAFGLPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGDKYFFAVRPPAA-RGRRQHVTASGGCWKpAGGRDKP 107
                       79****************************.8899998***********43..456789*****99875.68898889999****66678*** PP

               NAM  92 vlsk...kgelvglkktLvfy........kgrapkgektdWvmheyrl 128
                       v+++   +++lvg+kk +vf          + a  +    Wvmhey+l
  LOC_Os08g42400.3 108 VVVArcgGSHLVGVKKGMVFVprqgrkapAAAAAAAGGGCWVMHEYSL 155
                       99988988999**********8854433222333333667******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-3614160IPR003441NAC domain
PROSITE profilePS5100535.53119164IPR003441NAC domain
PfamPF023652.6E-2020155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MERAAAAAPV VVRHGGVVLP PGFRFHPTDE ELVVQYLRRK AFGLPLPAAV IPDLHNLFKL  60
DPWDIPGASS DGDKYFFAVR PPAARGRRQH VTASGGCWKP AGGRDKPVVV ARCGGSHLVG  120
VKKGMVFVPR QGRKAPAAAA AAAGGGCWVM HEYSLALPMH KKNG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-231716415150NO APICAL MERISTEM PROTEIN
1ut4_B9e-231716415150NO APICAL MERISTEM PROTEIN
1ut7_A9e-231716415150NO APICAL MERISTEM PROTEIN
1ut7_B9e-231716415150NO APICAL MERISTEM PROTEIN
3swm_A1e-221716418153NAC domain-containing protein 19
3swm_B1e-221716418153NAC domain-containing protein 19
3swm_C1e-221716418153NAC domain-containing protein 19
3swm_D1e-221716418153NAC domain-containing protein 19
3swp_A1e-221716418153NAC domain-containing protein 19
3swp_B1e-221716418153NAC domain-containing protein 19
3swp_C1e-221716418153NAC domain-containing protein 19
3swp_D1e-221716418153NAC domain-containing protein 19
4dul_A9e-231716415150NAC domain-containing protein 19
4dul_B9e-231716415150NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6Z1G9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g42400.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g42400
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615430.0AK061543.1 Oryza sativa Japonica Group cDNA clone:006-311-A02, full insert sequence.
GenBankAK0679060.0AK067906.1 Oryza sativa Japonica Group cDNA clone:J013126H02, full insert sequence.
GenBankAK0687760.0AK068776.1 Oryza sativa Japonica Group cDNA clone:J013160K11, full insert sequence.
GenBankAK1047660.0AK104766.1 Oryza sativa Japonica Group cDNA clone:001-038-H11, full insert sequence.
GenBankEU8469970.0EU846997.1 Oryza sativa Japonica Group clone KCS078C08 NAC4 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650414.11e-114NAC domain-containing protein 18
TrEMBLQ6Z1G91e-113Q6Z1G9_ORYSJ; NAC4 protein
STRINGOS08T0535800-021e-114(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.18e-28NAC domain containing protein 83