PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g44190.1
Common NameLOC9268017, OJ1150_A11.6, Os08g0555700, OSNPB_080555700, P0439B07.21
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 159aa    MW: 16587.5 Da    PI: 9.5308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g44190.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000135981123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C ++F ++  L  H++ H
  LOC_Os08g44190.1 59 FSCTYCRRRFYSSQALGGHQNAH 81
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.43E-65686No hitNo description
PROSITE profilePS5015711.0325986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEKEIISARS TTTTTTTAAA GDVNLDLRLV HSTAAGRQHT AATRNPAPPL AAAGDDRAFS  60
CTYCRRRFYS SQALGGHQNA HKLERSLAKR SRELSAGVTT AAAPPPPHPE LGWPYPPQGG  120
AAAAVVSWIA DGGRRYGYRV HAAAAGGDAE DIDLSLKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.159760.0seed
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6Z0T3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g44190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g44190
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039280.0AP003928.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1150_A11.
GenBankAP0054800.0AP005480.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0439B07.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648530.11e-111zinc finger protein 2
TrEMBLA0A0E0QM941e-110A0A0E0QM94_ORYRU; Uncharacterized protein
TrEMBLQ6Z0T31e-110Q6Z0T3_ORYSJ; Os08g0555700 protein
STRINGORUFI08G25750.11e-111(Oryza rufipogon)
STRINGOS08T0555700-001e-111(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.18e-19zinc finger protein 2