PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g03500.1
Common NameLOC4346425, Os09g0122000, OsJ_28411, OSNPB_090122000, P0415D04.22
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 417aa    MW: 45015.8 Da    PI: 9.4865
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g03500.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-05309331123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C +Cg++Fs+   L  H+++H
  LOC_Os09g03500.1 309 YECRKCGTMFSSGQALGWHMKSH 331
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-6306335No hitNo description
Gene3DG3DSA:3.30.160.605.0E-4308332IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.1E-8309331IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.489309336IPR007087Zinc finger, C2H2
PROSITE patternPS000280311331IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAPSRISSSE SERPVGSYRF HIPRQPPRIQ AEGGKRHMII GDRRHGGTAL WRRGSMLPPS  60
LPRWGVEDGH GHVDGSSRQH PSELGFSSAL SVPIGGWIWR LAAAQAHGEV IDGGRCEDEA  120
GDHMQPPPAS SASMAMLSEE RISASGIVVR ERQLHGYGER PFQPCLATMA AKGTAREIST  180
KKIAKKDHGE VGDLTMAVLM PSWTSTGNHS SRNPTRCLEQ LPEPSKRAHS EAYGNMQLAT  240
GDLIVGLHKQ ATITVPPPNI SEIGGHLTAH KNNEMTMGKG VQHTIDVSVA KEATRSLVSS  300
ARQSRRGPYE CRKCGTMFSS GQALGWHMKS HNSDERWGDK RVPSAFVGSF LSLITPIDVS  360
NVSVPSSRNP HTSSIPNKEE GRVLVMGAAP LNGVPKGSFR LFGENIAEAP KEEPME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.589620.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6K280
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g03500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g03500
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2421860.0AK242186.1 Oryza sativa Japonica Group cDNA, clone: J075161K18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611340.10.0uncharacterized protein LOC4346425
TrEMBLQ6K2800.0Q6K280_ORYSJ; Os09g0122000 protein
STRINGOS09T0122000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162161213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.14e-07C2H2 family protein