PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g11460.2
Common NameLOC4346628, Os09g0286600, OsJ_28693, OSNPB_090286600, P0453B09.1, P0663H05.17
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 233aa    MW: 26038.6 Da    PI: 8.4969
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g11460.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-17114161354
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                       y+G+r+++ +grW++eIrdp+    +  r++lg+f+tae+Aa+a++   ++++
  LOC_Os09g11460.2 114 YRGIRQRP-WGRWASEIRDPV----KgIRVWLGTFDTAEGAARAYDDEVRRIY 161
                       9*******.**********75....44*******************8777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.1E-36113176IPR001471AP2/ERF domain
PROSITE profilePS5103222.484113170IPR001471AP2/ERF domain
CDDcd000181.42E-25114169No hitNo description
SuperFamilySSF541712.88E-20114171IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-30114171IPR001471AP2/ERF domain
PfamPF008472.7E-9114154IPR001471AP2/ERF domain
PRINTSPR003673.6E-11114125IPR001471AP2/ERF domain
PRINTSPR003673.6E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MRRRVSSSSS SSSSSSPARH HKARRSRRKL AVDEDWEAAF REFLSRDHDD DDDDHDGQHV  60
VVAPLIRGSD KCVHGHEVVA STVGGGASGG RRRADDDDGE RRRRRRREKR SYPYRGIRQR  120
PWGRWASEIR DPVKGIRVWL GTFDTAEGAA RAYDDEVRRI YGGNAKTNFP PSPPTPPPPE  180
KPAAERSPST TPTTTTEDSG DSRILIECCS DDLMDSLLAA FDMTTGDMRF WS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-18114170360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-18114170663ATERF1
3gcc_A6e-18114170663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190106RRRADDDDGERRRRRRR
299107ERRRRRRRE
3100106RRRRRRR
4100107RRRRRRRE
5101109RRRRRREKR
6103108RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.810990.0flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329753620.0
Expression AtlasQ6EN68-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g11460.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g11460
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0900560.0AC090056.2 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence.
GenBankAK0653440.0AK065344.1 Oryza sativa Japonica Group cDNA clone:J013007H05, full insert sequence.
GenBankAP0057050.0AP005705.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0453B09.
GenBankAP0067580.0AP006758.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0663H05.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankEU8475190.0EU847519.1 Oryza sativa Japonica Group clone OsEP3 AP2/ERF domain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651344.11e-166ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0QP671e-165A0A0E0QP67_ORYRU; Uncharacterized protein
TrEMBLQ6EN681e-165Q6EN68_ORYSJ; AP2/ERF domain protein
STRINGORUFI09G04400.11e-166(Oryza rufipogon)
STRINGOS09T0286600-021e-166(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.16e-26ERF family protein