PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g11480.1
Common NameLOC4346629, Os09g0287000, OsJ_28694, OSNPB_090287000, P0453B09.7, P0663H05.23
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 251aa    MW: 27023.8 Da    PI: 4.5686
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g11480.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.4e-20102151356
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +grW++eIrdp+    + +r++lg+f+ta eAa+a++a +++++g+
  LOC_Os09g11480.1 102 YRGVRQRP-WGRWASEIRDPV----KgARVWLGTFDTAVEAARAYDAEARRIHGH 151
                       9*******.**********75....44**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.787101158IPR001471AP2/ERF domain
SMARTSM003801.9E-37101164IPR001471AP2/ERF domain
PfamPF008476.6E-12102151IPR001471AP2/ERF domain
PRINTSPR003672.6E-11102113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-31102158IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-22102159IPR016177DNA-binding domain
CDDcd000183.08E-27104157No hitNo description
PRINTSPR003672.6E-11124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MCGGALIPND YGDKPPPPPS ESSEWDATTK MKKKKKRGGG GDDDWEAAFR EFIAGDDDDD  60
DGGVSMFPSG AGTMETTTEV APAAAVVERP RRRRRVRRSY PYRGVRQRPW GRWASEIRDP  120
VKGARVWLGT FDTAVEAARA YDAEARRIHG HKARTNFPPD EPPLPAPSQA PFCFLLDDDD  180
DDDGVARGNS PASSSAPDRA SACTTSSTVA SGERGDELIL LECCSDDVMD SLLAGFDVSS  240
EPRSVLGMVN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-19102158663ATERF1
3gcc_A8e-19102158663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896RPRRRRRVR
29097RRRRRVRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.284060.0leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172333060.0
Expression AtlasQ6EN65-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g11480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g11480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0686880.0AK068688.1 Oryza sativa Japonica Group cDNA clone:J013163J01, full insert sequence.
GenBankAK1060570.0AK106057.1 Oryza sativa Japonica Group cDNA clone:001-206-F09, full insert sequence.
GenBankEU8475200.0EU847520.1 Oryza sativa Japonica Group clone OsEP4 AP2/ERF domain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610635.10.0ethylene-responsive transcription factor 1-like
TrEMBLQ6EN651e-179Q6EN65_ORYSJ; AP2/ERF domain protein
STRINGOS09T0287000-011e-180(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.13e-19ERF family protein