PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g11870.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 792aa    MW: 91861.1 Da    PI: 8.299
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g11870.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.23.2e-24133222190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       kfY +YAk  GFsvrk++ k++  +gei++r+fvCs+eg+re ++ + te++r++ra t++gC akl++++++ +g+w v++++++H+Hela
  LOC_Os09g11870.1 133 KFYLDYAKGKGFSVRKNNLKRK--DGEIIWRQFVCSCEGYRELKHFErTERKREPRALTHCGCLAKLEIERNEeKGVWFVKEFDNQHTHELA 222
                       6****************99887..9*****************999876899999******************99****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-23133222IPR004330FAR1 DNA binding domain
PfamPF105512.6E-33344438IPR018289MULE transposase domain
PROSITE profilePS509668.716622659IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MADRLCIGII LALHSAARFC WPRCEVMKKE GYVGFLLGQQ RRYCARETIV NCIVMENCIW  60
QRHKSVDTVP QFLPQPRRLA RLRRRPYRIG SHLRFASQVR SDIMTSSYVS LEDQEEYKMM  120
GTVVFSSEEE GYKFYLDYAK GKGFSVRKNN LKRKDGEIIW RQFVCSCEGY RELKHFERTE  180
RKREPRALTH CGCLAKLEIE RNEEKGVWFV KEFDNQHTHE LANPDHVAFL GVHRVMSDSK  240
KAQAVELRMS GLRPFQVMEV MENNHDELDE VGFVMKDLYN FFTRYEMKNI KGHDAEDVLK  300
YLTRKQEEDA EFFFKYTTDE EGRLRNVFWA DAESRLDYAA FGGVVIFDST YRVNKYNLPF  360
IPFIGVNHHR STTIFGCGIL SNESVNSYCW LLETFLEAMR QVHPKSLITD GDLAMAKAIS  420
KVMPGAYHRL CTWHIEENMS RHLRKPKLDE LRKLIYESMD EEEFERRWAD FKENGGTGNE  480
QWIALMYRLR EKWAAAYTDG KYLLGMRSNQ RSESLNSKLH TLLKRNMSLM CLVKHVKLCI  540
QGLRKKEAQL DAKSTNSVPF CRIDADPLEK DAARIYTAVV FKKVRAQIRL IAGLEVISGT  600
NQDGSSLYVV GLKDDNEVWD EVRVSFKGQA LEGVECHCRK MECEDIPCSH IFVVVKFLGF  660
DTIPRCCVVD RWTMGAKAAF RSDRNADPNV WSEHMVRYRS LRNLGSDAFF EAARNPEQTE  720
KAMDFLKGIL DKGSSSDENI VAGDFGPMPT HFLSSNQPLE KRVLDPEEIR AKGAPSKRRR  780
PFHETLHTNN Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.801530.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976024520.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g11870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g11870
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0059070.0AP005907.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1151D08.
GenBankAP0064490.0AP006449.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1106B03.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611098.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLQ6EP190.0Q6EP19_ORYSJ; Putative far-red impaired response protein
STRINGSi015784m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-97FAR1-related sequence 5