PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g13680.1
Common NameOs09g0307400, OSNPB_090307400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 386aa    MW: 40078.1 Da    PI: 7.6722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g13680.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-05188207120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C  C+k+F+r  n++ H+
  LOC_Os09g13680.1 188 FSCAVCNKTFNRFNNMQMHM 207
                       89*****************9 PP
2zf-C2H213.60.0002279301123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y C  Cgk+F  + + ++H +++
  LOC_Os09g13680.1 279 YACRRCGKRFAVRGDWRTHEKNC 301
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.98E-5183209No hitNo description
PROSITE profilePS5015710.055188215IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-5188207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.64188210IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SMARTSM00355230242274IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.14E-6265299No hitNo description
Gene3DG3DSA:3.30.160.601.3E-6265299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035558279299IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704279299IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MHPHLYQSHH HHQHVAPPTK HGGGGAGAGG EEDDQSMLLL SLWPPGHSSH HHQHHHHGAA  60
SSSACSSASI SAAAHSGGGG GGHGAAAAAA SSWFNPSHYH GGGGGGGGFL FQEQQEPNVS  120
ISLSIAPPCG VSGGNAAAMA AAGSFATSPL PQQPVASSAV ATAAGGGQAP SQYWIPSAAE  180
ILVGSTQFSC AVCNKTFNRF NNMQMHMWGH GSQYRKGSES LRGAITVGGA APPASLMRLP  240
CYCCAEGCRN NVEHPRARPL KDFRTLQTHY RRKHGARPYA CRRCGKRFAV RGDWRTHEKN  300
CGKLWFCVCG SDFKHKRSLK DHVRSFGGGH APHIVESSST GAGGGGGCGG AGADDDDDEY  360
YDDDDDTVSL SRATSAHDDA DMIVV*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0XJS2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g13680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g13680
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0062350.0AP006235.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0017N10.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876264.10.0zinc finger protein WIP6
TrEMBLA0A0P0XJS20.0A0A0P0XJS2_ORYSJ; Os09g0307400 protein
STRINGOS09T0307400-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.19e-96C2H2-like zinc finger protein