PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g24480.1
Common NameOs09g0410500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 259aa    MW: 27935.9 Da    PI: 7.3029
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g24480.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.73.1e-3676156383
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 
                        ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l+ ++sss++++  +++ ssa+
  LOC_Os09g24480.1  76 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLAADPSSSSHRAAGDTRMSSAE 156
                       689************************************************************888886663333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136934.92277135IPR017887Transcription factor TCP subgroup
PfamPF036347.4E-3477156IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MQQQLDQQQQ QQQHQYDHFF SGHGQFNSET LEAVLCRPPR GAAADPAVPA AAAAAAVLTA  60
ARNGGGGHGR ARKRPFRTDR HSKIRTAQGV RDRRMRLSLD VARDFFALQD RLGFDKASKT  120
VDWLLTQSKP AIDRLAADPS SSSHRAAGDT RMSSAERGGD HHMVAVGAAG SGKGDADKAR  180
GPRGGRSAPM ELGCELGRLV PAPVLGEYYY ELAEMMSNNT GGEGDDDGDY DDDGDFLDDS  240
GFLCHYRSKK KFSIKDIS*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ0J1V2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g24480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g24480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050930.0AP005093.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1294_G06.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankEU7024070.0EU702407.1 Oryza sativa Japonica Group putative TCP transcription factor (DP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611514.11e-172transcription factor TB1-like
TrEMBLQ0J1V20.0Q0J1V2_ORYSJ; Os09g0410500 protein
STRINGOS09T0410500-001e-172(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.28e-28TCP family protein