PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g25060.1
Common NameLOC4347069, Os09g0417600, OsJ_29378, OSNPB_090417600, P0014G10.39
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 328aa    MW: 34780.2 Da    PI: 8.0535
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g25060.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-29165224159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed ++++ tYegeHnh+
  LOC_Os09g25060.1 165 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCPVKKKVQRSAEDSSLLVATYEGEHNHP 224
                       58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.934160226IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-28161226IPR003657WRKY domain
SuperFamilySSF1182901.96E-25162226IPR003657WRKY domain
SMARTSM007742.8E-34165225IPR003657WRKY domain
PfamPF031062.9E-24166224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009072anatomyplant ovary
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDAAWRGGVG CSPVCLDLCV GLSPVREPSA ARHELLDRPA GCRGGGDSKS MTNDEAKIVE  60
AKVTQMSEEN RRLTEVIARL YGGQIPRLGL DGSASPPRPV SPLSGKKRSR ESMETANSCD  120
ANSNRHQGGD ADHAESFAAD DGTCRRIKVS RVCRRIDPSD TSLVVKDGYQ WRKYGQKVTR  180
DNPSPRAYFR CAFAPSCPVK KKVQRSAEDS SLLVATYEGE HNHPHPSPRA GELPAAAGGA  240
GGSLPCSISI NSSGPTITLD LTKNGGAVQV VEAAHPPPPP DLKEVCREVA SPEFRTALVE  300
QMASALTSDP KFTGALAAAI LQKLPEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-201642261374WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.256060.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329783550.0
Expression AtlasQ6EPZ2-
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21961049}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g25060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:17601827). {ECO:0000269|PubMed:16528562, ECO:0000269|PubMed:17601827, ECO:0000269|PubMed:23462973}.
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g25060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0599660.0AK059966.1 Oryza sativa Japonica Group cDNA clone:006-211-F11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610695.10.0WRKY transcription factor WRKY76
SwissprotQ6EPZ20.0WRK76_ORYSJ; WRKY transcription factor WRKY76
TrEMBLQ20DP50.0Q20DP5_ORYSA; WRKY transcription factor 76
STRINGOS09T0417600-020.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-54WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Peng Y,Bartley LE,Canlas P,Ronald PC
    OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity.
    Rice (N Y), 2010. 3(1): p. 36-42
    [PMID:21961049]
  3. Chujo T, et al.
    OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus.
    Plant Mol. Biol., 2013. 82(1-2): p. 23-37
    [PMID:23462973]
  4. Yokotani N, et al.
    WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance.
    J. Exp. Bot., 2013. 64(16): p. 5085-97
    [PMID:24043853]
  5. Liu J, et al.
    Alternative Splicing of Rice WRKY62 and WRKY76 Transcription Factor Genes in Pathogen Defense.
    Plant Physiol., 2016. 171(2): p. 1427-42
    [PMID:27208272]