PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g26210.1
Common NameLOC9267830, Os09g0431900, OSNPB_090431900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 171aa    MW: 18308 Da    PI: 8.4732
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g26210.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-057799123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F ++  L  H++ H
  LOC_Os09g26210.1 77 FTCTYCDKKFYSSQALGGHQNAH 99
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.54E-767118No hitNo description
PROSITE profilePS5015711.38577104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MLTTFSAFSQ EGRGVAATSG GGGPFTGWCS SRRRRPEAPA AMDRYNGGGG GGEEGDEQLD  60
LNLSLQPSQA NEPPGYFTCT YCDKKFYSSQ ALGGHQNAHK FERSVAKRTR ELAAARRQQA  120
ADEEARRGAG TTTTREPTGN ASSSYQRASP PAEARRRDLL TDDIDLSLKL *
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0XNV4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g26210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g26210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057470.0AP005747.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611311.11e-122zinc finger protein 2
TrEMBLA0A0P0XNV41e-120A0A0P0XNV4_ORYSJ; Os09g0431900 protein
STRINGOS09T0431900-001e-121(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.18e-15zinc finger protein 2