PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g28210.1
Common NameB1342C04.6, LOC4347252, Os09g0455300, OSNPB_090455300, P0025H07.25
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 237aa    MW: 25347.7 Da    PI: 6.8057
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g28210.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.8e-08156196954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  LOC_Os09g28210.1 156 ARLRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 196
                       699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.421147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-13148207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14151207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-13153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-5157196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-6170201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDFDLFNSYP ESQLDLMSTM LQLEQLTALS DQSLFMAAPT SPPVSPMGTP SPQFSPPPQM  60
SVTTTTAGGG YQDQYNSMPA TYGAGAGVHQ LDFAMSSPGS DSGAPQGSSS SSSSEAMREM  120
IFHIAALQPV EIDPEAVRPP KRRNVRISKD PQSVAARLRR ERISERIRIL QRLVPGGTKM  180
DTASMLDEAI HYVKFLKSQV QSLERAAAAT GAAAHRAAAF GAAYPAALPM QHHAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142RPPKRR
2156161RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.510630.0flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329804820.0
Expression AtlasQ67TR8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g28210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g28210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0604770.0AK060477.1 Oryza sativa Japonica Group cDNA clone:001-012-F09, full insert sequence.
GenBankAK0704580.0AK070458.1 Oryza sativa Japonica Group cDNA clone:J023048E05, full insert sequence.
GenBankAP0056550.0AP005655.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0025H07.
GenBankAP0060570.0AP006057.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1342C04.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610996.11e-172transcription factor HEC2
TrEMBLA0A0E0GN981e-171A0A0E0GN98_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QSB71e-171A0A0E0QSB7_ORYRU; Uncharacterized protein
TrEMBLA2Z2001e-171A2Z200_ORYSI; Uncharacterized protein
TrEMBLI1QPI61e-171I1QPI6_ORYGL; Uncharacterized protein
TrEMBLQ67TR81e-171Q67TR8_ORYSJ; Basic helix-loop-helix (BHLH)-like protein
STRINGORUFI09G13650.11e-171(Oryza rufipogon)
STRINGOS09T0455300-011e-171(Oryza sativa)
STRINGONIVA03G20840.11e-171(Oryza nivara)
STRINGORGLA09G0096500.11e-171(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-39bHLH family protein