PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g28440.1
Common NameB1045B05.13, LOC4347266, Os09g0457900, OSNPB_090457900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 275aa    MW: 29189.7 Da    PI: 6.2795
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g28440.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35e-20129179256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr ++ +g+W+AeIrdp+    r  r +lg+f+taeeAa+a+++a+++++g+
  LOC_Os09g28440.1 129 VYRGVRHRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDRAALEFRGA 179
                       69****888.**********82....48*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.5E-34129192IPR001471AP2/ERF domain
PROSITE profilePS5103225.093129186IPR001471AP2/ERF domain
PfamPF008473.5E-13129178IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23129188IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-31129187IPR001471AP2/ERF domain
CDDcd000187.65E-31130186No hitNo description
PRINTSPR003675.3E-11130141IPR001471AP2/ERF domain
PRINTSPR003675.3E-11152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MTKKVIPAMA AARQDSCKTK LDERGGSHQA PSSARWISSE QEHSIIVAAL RYVVSGCTTP  60
PPEIVTVACG EACALCGIDG CLGCDFFGAE AAGNEEAVMA TDYAAAAAAA AVAGGSGGKR  120
VRRRRKKNVY RGVRHRPWGK WAAEIRDPRR AVRKWLGTFD TAEEAARAYD RAALEFRGAR  180
AKLNFPCSEP LPMPSQRNGN GGDAVTAATT TAEQMTPTLS PCSADAEETT TPVDWQMGAD  240
EAGSNQLWDG LQDLMKLDEA DTWFPPFSGA ASSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20126187264ATERF1
3gcc_A1e-20126187264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126KRVRRRRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.524510.0root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329772130.0
Expression AtlasQ67U00-
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g28440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g28440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671950.0AK067195.1 Oryza sativa Japonica Group cDNA clone:J013098P10, full insert sequence.
GenBankAP0058910.0AP005891.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1045B05.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611044.20.0ethylene-responsive transcription factor ERF109
SwissprotQ9SZ062e-30EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A0D3H7P90.0A0A0D3H7P9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0QSC90.0A0A0E0QSC9_ORYRU; Uncharacterized protein
TrEMBLB2MV910.0B2MV91_ORYSI; AP2 domain containing protein
TrEMBLI1QPK10.0I1QPK1_ORYGL; Uncharacterized protein
TrEMBLQ67U000.0Q67U00_ORYSJ; Ethylene-binding protein-like
STRINGORUFI09G13770.10.0(Oryza rufipogon)
STRINGOS09T0457900-010.0(Oryza sativa)
STRINGORGLA09G0098000.10.0(Oryza glaberrima)
STRINGOBART09G12810.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-21redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]