PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g28900.1
Common NameOSJNBb0019B14.23
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 216aa    MW: 23003.8 Da    PI: 5.9359
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g28900.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92e-142976254
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      rr+h+e+Er+RR+riN  +++Lr l+P+a      +++Ka+ L ++v+Y+++L
  LOC_Os09g28900.1 29 RRSHSEAERKRRERINAHLDTLRGLVPSA-----SRMDKAALLGEVVRYVRKL 76
                      99**************************9.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-152779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.51E-122779No hitNo description
SuperFamilySSF474595.37E-152780IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.0342776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-122976IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-123382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MVAARSGDDA ELRLDVECLA AAPRWTRARR SHSEAERKRR ERINAHLDTL RGLVPSASRM  60
DKAALLGEVV RYVRKLRSEA AGSAAVVPGE GDEVVVEEEE VEVEGCSCDA GERQAARRVK  120
ASVCCADRPG LMSELGDAER SVSARAVRAE IATVGGRTRS DLELDVARTA AAGGGSNGAS  180
QLPALQAALR AVIMSQEELL AVESYKQRRF SADFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540ERKRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.739881e-41callus
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ69MD0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g28900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g28900
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057550.0AP005755.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBb0019B14.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875916.12e-84transcription factor bHLH131
TrEMBLQ69MD01e-146Q69MD0_ORYSJ; BHLH-like protein
STRINGOBART09G13210.11e-122(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-17bHLH family protein