PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os09g29960.1

Common Name

LOC9268074, Os09g0475800, P0556A05.8

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Dof

Protein Properties

Length: 231aa MW: 23762.4 Da PI: 9.4724

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os09g29960.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.8	5e-38	42	98	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +ss LOC_Os09g29960.1 42 DPCPRCESRDTKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGSRKSSTSS 98 57**************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-23	41	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	42	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-32	43	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MQEAGRRPAP QFAGVDLRRP KGYPAAAQLT PAAEEAAAGV GDPCPRCESR DTKFCYYNNY 60 NTSQPRHFCK SCRRYWTKGG SLRNVPVGGG SRKSSTSSSS AAAAAASSSS SPSSPAKSPK 120 RSKNSKRRRV SPPPPQPVPA PPPPTTADAA DVAAPTAPEA TTKKAPEDLT AAAATQPAVA 180 LGLGVADGGG GGKEHLDTSP FEWPSGCDLG PYWPTGVFAD TDPSLFLNLP *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	129	KRRRV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.81252	0.0	panicle

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q651Z2

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in all tissues examined.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00672	SELEX	Transfer from GRMZM2G009406	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os09g29960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os09g29960

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005759	0.0	AP005759.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0556A05.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	KC996733	0.0	KC996733.1 Oryza sativa transcription factor Dof25 (Dof25) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015610919.1	1e-163	dof zinc finger protein MNB1A
Swissprot	P38564	1e-55	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	A0A0E0QSR1	1e-162	A0A0E0QSR1_ORYRU; Uncharacterized protein
TrEMBL	Q651Z2	1e-162	Q651Z2_ORYSJ; Os09g0475800 protein
TrEMBL	T2CYQ8	1e-162	T2CYQ8_ORYSA; Transcription factor Dof25
STRING	ORUFI09G14860.1	1e-163	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	5e-26	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	LOC_Os09g29960.1
Entrez Gene	9268074

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]