PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g33490.1
Common NameLOC4347530, Os09g0509100, OsJ_29961, OSNPB_090509100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 248aa    MW: 26168.3 Da    PI: 9.8914
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g33490.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.72.2e-3681431128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyat..gkrknratksgyWkatgkdk 90 
                       lppGfrFhPtdeelvv+yL++++  ++l++  vi++v d + ++PwdLp    a++ e yfFs r+ ++a+  g  ++r + sgyWkatg +k
  LOC_Os09g33490.1   8 LPPGFRFHPTDEELVVQYLRRRALCRPLPA-AVIPDVhDATVLDPWDLP---GAGDGEAYFFSFRQLAAASggGGWRRRRAGSGYWKATGAEK 96 
                       79****************************.8999999***********...457889*******999986324456666799********** PP

               NAM  91 evlsk...........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +v+ +           +++lvg+k+tL f +++ p+  +t+Wvmheyrl
  LOC_Os09g33490.1  97 PVFLRgfgcgggggggGQHLVGVKTTLLFLRAKPPS--RTHWVMHEYRL 143
                       *****999999998877778**********666666..*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-424179IPR003441NAC domain
PROSITE profilePS5100543.6338179IPR003441NAC domain
PfamPF023658.2E-239143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MATPGQQLPP GFRFHPTDEE LVVQYLRRRA LCRPLPAAVI PDVHDATVLD PWDLPGAGDG  60
EAYFFSFRQL AAASGGGGWR RRRAGSGYWK ATGAEKPVFL RGFGCGGGGG GGGQHLVGVK  120
TTLLFLRAKP PSRTHWVMHE YRLAAAGAVA VAAAGQTKRG NHSCMAQPGE WVVCRIFLKN  180
NRSSRRRAGD ADGETPVTGV HGHRRRQPSP SPSSSSCVTA EVSDGEGEEE VSSGSINGAP  240
SASQREA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-31718114170Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.375481e-163callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166411461e-163
Expression AtlasQ0J0H5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g33490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g33490
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605090.0AK060509.1 Oryza sativa Japonica Group cDNA clone:001-019-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651404.11e-180NAC domain-containing protein 83
TrEMBLQ0J0H51e-179Q0J0H5_ORYSJ; Os09g0509100 protein
STRINGOS09T0509100-011e-180(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Representative plantOGRP1312545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-32NAC domain containing protein 83