PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g38610.1
Common NameLOC4347837, OJ1065_E04.11, Os09g0558800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 166aa    MW: 16975.7 Da    PI: 7.1961
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g38610.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000294971123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C++ F ++  L  H++ H
  LOC_Os09g38610.1 49 FSCNYCHRKFFSSQALGGHQNAH 71
                      89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.52E-64776No hitNo description
PROSITE profilePS5015710.994976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MESEPAQVHG GVNLNLRVLE TSPRRRSANG GGGGAAPAAA AAVDPREAFS CNYCHRKFFS  60
SQALGGHQNA HKLERTLAKR SRDIVMTAAV SPSPSSSSSS RAVHGFDGVA GGFFWTAPPY  120
GHAAAAEAAE EDHDVAPPAP PPADGGCGGG RYGRNGEEID LSLKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1012841e-161flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO865993991e-161
Expression AtlasQ653T1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g38610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g38610
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1375920.0AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence.
GenBankAP0050900.0AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611461.11e-117zinc finger protein 2
TrEMBLA0A0D3H9Z21e-115A0A0D3H9Z2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0B6I51e-115A0A0E0B6I5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0INJ61e-115A0A0E0INJ6_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QV081e-115A0A0E0QV08_ORYRU; Uncharacterized protein
TrEMBLI1QR841e-115I1QR84_ORYGL; Uncharacterized protein
TrEMBLQ653T11e-115Q653T1_ORYSJ; Os09g0558800 protein
STRINGOGLUM09G20140.11e-116(Oryza glumipatula)
STRINGORUFI09G21000.11e-116(Oryza rufipogon)
STRINGONIVA09G20570.11e-116(Oryza nivara)
STRINGORGLA09G0156300.11e-116(Oryza glaberrima)
STRINGOBART09G19440.11e-116(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-18zinc finger protein 2