PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g39490.1
Common NameLOC4347894, OJ1003_C09.9, OsJ_30397
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YB
Protein Properties Length: 168aa    MW: 18243.3 Da    PI: 4.8697
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g39490.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB54.43.1e-1734129695
             NF-YB   6 rflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                       ++lP a v r++k+ l + a       + kda     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l+++r+
  LOC_Os09g39490.1  34 EELPKAIVRRLVKEKLAQVAAggaeviVNKDAMSAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFPEFVEPLNTSLQEFRN 126
                       679**********99976543222333899**************************************************************9 PP

             NF-YB  93 leg 95 
                        ++
  LOC_Os09g39490.1 127 KNA 129
                       776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.1E-3228164IPR009072Histone-fold
PfamPF008083.3E-1135105IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471138.75E-2736162IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAGETGEGGG SHSQPEKQPG QAAAAASMAE AEVEELPKAI VRRLVKEKLA QVAAGGAEVI  60
VNKDAMSAFA ESARIFIHYL SATANDMCKE SKRQTINADD VLKALDEMEF PEFVEPLNTS  120
LQEFRNKNAA RRSETTQKKA EKRRKIDKES LPQEQNDAAD HGKTDED*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.793240.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976099780.0
Expression AtlasQ652Q3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g39490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g39490
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426340.0AK242634.1 Oryza sativa Japonica Group cDNA, clone: J090023D18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611896.11e-119DNA polymerase epsilon subunit 3
TrEMBLA0A0E0QVA01e-118A0A0E0QVA0_ORYRU; Uncharacterized protein
TrEMBLQ652Q31e-118Q652Q3_ORYSJ; Uncharacterized protein
STRINGORUFI09G21680.11e-119(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Representative plantOGRP78621516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.13e-35nuclear factor Y, subunit B11