PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g07060.1
Common NameOs10g0158625, OsJ_30781, OSJNAa0036D19.3, OSJNBa0036D19.9
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 169aa    MW: 18378 Da    PI: 10.7727
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g07060.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.21.6e-1414941197
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                      ++++ l +p + a+++++++     l+l++++g + ++++  +   ++ ++t+GWkeF++a gL++g++++F++++rs++  +v+++
  LOC_Os10g07060.1 14 TNQSYLPVPITLATAYEMQHGD--SLRLKTSHGLKIKIRI--KEAASTLYMTTGWKEFAEATGLETGETILFRMSSRSKA--RVMLL 94
                      5556677888889999988655..6***************..999999*************************9988777..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.379497IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-14996IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-121495IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-131597IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSSVVFASAR LNATNQSYLP VPITLATAYE MQHGDSLRLK TSHGLKIKIR IKEAASTLYM  60
TTGWKEFAEA TGLETGETIL FRMSSRSKAR VMLLNRQCLI RCPVKTPSTT SSDKNRSLSP  120
SDQLTRASTS AHPSTSKSIP PLRNGTGSTK RSIADTSFCH QLKLTAEN*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XGM6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g07060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g07060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0877230.0AC087723.3 Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence.
GenBankAC1166000.0AC116600.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0036D19, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ7XGM61e-122Y1086_ORYSJ; Putative B3 domain-containing protein Os10g0158600
TrEMBLA0A0E0IPL51e-102A0A0E0IPL5_ORYNI; Uncharacterized protein
STRINGOS10T0158625-001e-121(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3120544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.16e-09B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]