PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os10g07080.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 158aa MW: 16860 Da PI: 12.6347

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os10g07080.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	131	149	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 +C++s sr+s+L+rH ++ LOC_Os10g07080.1 131 ICHTSTSRRSSLRRHAERC 149 7**************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MSRHLSFGTP SPTTTRRCPC RRRSRRRNST SPPPSSATPW DATTSTATAA RSAWCSSASA 60 TRRVRLPLPP STTPPPPAPG PLRPPPRPPS PTRMTGDFAC PHLASWWGGP RSTSGALGGF 120 SGTGSATRWS ICHTSTSRRS SLRRHAERCS CRRRTGG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.46864	0.0	leaf\| panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32992093	0.0
Expression Atlas	Q7XGM5	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os10g07080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os10g07080

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC087723	0.0	AC087723.3 Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence.
GenBank	AC116600	0.0	AC116600.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0036D19, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q7XGM5	2e-97	Q7XGM5_ORYSJ; Expressed protein
STRING	ORGLA10G0024500.1	4e-96	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP52902	2	2

Link Out ? help Back to Top
Phytozome	LOC_Os10g07080.1