PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g25640.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 196aa    MW: 21919.3 Da    PI: 10.7103
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g25640.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.94.5e-24571871127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiyk.vePwdLpkkvka.eekewyfFskrdkkya..tgkrknratksgyWkatgk 88 
                       +p+Gf F P+d el+   ++k v+gk   + ++v+k+++i++ + P+++   +++ e+  +yfFskr+ +++  +++r+ r+++ g+Wka+g 
  LOC_Os10g25640.1  57 MPVGFYFVPKDLELLAILMCKLVRGKVPGAlNNVFKHIRILNsTPPSSMT-YIETmEDGYIYFFSKRQFATKarNKRRPMRVADGGTWKASGG 148
                       699**********************9965514569999766516778886.5555144577****998654433899999*9*********** PP

               NAM  89 dkevlskkgelvglkktLvfy...kgrapkgektdWvmheyr 127
                       +k+v    g +v  k t+vfy    + +++++kt+W mhe++
  LOC_Os10g25640.1 149 SKKVG---GIDVSQKFTMVFYerrFEGDRNPVKTNWGMHEFT 187
                       ***95...599**********43313466778********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-2751193IPR003441NAC domain
PROSITE profilePS5100526.94257195IPR003441NAC domain
PfamPF023657.6E-1458187IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEGVDRIGWN LGLGFLRKER PPVHGDSGGS GGSNSNDGKW KGKEKVVPEY GKNRHGMPVG  60
FYFVPKDLEL LAILMCKLVR GKVPGALNNV FKHIRILNST PPSSMTYIET MEDGYIYFFS  120
KRQFATKARN KRRPMRVADG GTWKASGGSK KVGGIDVSQK FTMVFYERRF EGDRNPVKTN  180
WGMHEFTKII PGTKN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.984201e-162flower
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ338M0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g25640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g25640
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1221441e-151AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence.
GenBankAP0149661e-151AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.14e-84NAC transcription factor NAM-B2 isoform X1
TrEMBLQ338M01e-141Q338M0_ORYSJ; No apical meristem protein
STRINGOBART10G08900.11e-94(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Representative plantOGRP985338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-10NAC family protein