PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os10g25850.1

Common Name

LOC4348557, NF-Y21, Os10g0397900, OsHAP2I, OSNPB_100397900

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NF-YA

Protein Properties

Length: 167aa MW: 18313.8 Da PI: 10.2119

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os10g25850.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	76.9	4e-24	67	123	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++I++RRq+R+ + +e+k+ ++ rk++l e+R+k+A+ R+Rg+gGrF LOC_Os10g25850.1 67 DEPIYVNAKQYHAIIRRRQRRKIVGSEDKV-AAIRKRILVEARQKQAKLRHRGKGGRF 123 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.0E-17	65	126	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	21.88	66	126	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.8E-17	68	123	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.2E-13	69	91	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.2E-13	100	123	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0020048	anatomy	microspore
PO:0001009	developmental stage	D pollen mother cell meiosis stage
PO:0007130	developmental stage	sporophyte reproductive stage

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MGFGESTQGN QRKLDGPGKV STELSLVNLE AKNLHPKPEC NQPIEHIPTK GMKCTPLLPL 60 PTEHADDEPI YVNAKQYHAI IRRRQRRKIV GSEDKVAAIR KRILVEARQK QAKLRHRGKG 120 GRFISIEHPL ELSMDDQISK NGGSASPSSS TVSENSSNVN GFTGDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-13	67	125	2	60	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.22789	0.0	leaf\| panicle\| stem

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q338K5

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os10g25850.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os10g25850

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU847005	0.0	EU847005.1 Oryza sativa Japonica Group clone KCS241E10 CCAAT-binding transcription factor mRNA, complete cds.
GenBank	HQ731478	0.0	HQ731478.1 Oryza sativa Japonica Group NF-Y transcription factor 21 (NF-Y21) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613426.1	1e-120	nuclear transcription factor Y subunit A-3
TrEMBL	A0A0E0QYQ8	1e-119	A0A0E0QYQ8_ORYRU; Uncharacterized protein
TrEMBL	Q338K5	1e-119	Q338K5_ORYSJ; CCAAT-binding transcription factor
STRING	OS10T0397900-00	1e-120	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17468	10	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	7e-18	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	LOC_Os10g25850.1
Entrez Gene	4348557

Publications ? help Back to Top
Thirumurugan T,Ito Y,Kubo T,Serizawa A,Kurata N Identification, characterization and interaction of HAP family genes in rice. Mol. Genet. Genomics, 2008. 279(3): p. 279-89 [PMID:18193457]