PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g26240.1
Common NameOSJNBa0044A10.8
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 173aa    MW: 19373.3 Da    PI: 10.6411
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g26240.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.36.5e-19291579127
               NAM   9 PtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkdkevlsk 95 
                       P+  el    L+ k+   +    l++v+++++i++++P  L+ + + +ee+  +yfF + + +++  +++r+++++k g+Wka+  +k+v sk
  LOC_Os10g26240.1  29 PRTLELFAI-LRCKLVCGQlpGALNNVFEHIRILEFHPALLHeTYIGKEEDgYIYFFNRWQFATKagNKRRPTQVAKGGTWKASSGSKTVRSK 120
                       666677744.44444444423344567999***********844555555535588887665444226678888899**************99 PP

               NAM  96 ..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                         +g ++g k t++fy    + ++++ kt+W mhe++
  LOC_Os10g26240.1 121 kvGGIDIGQKLTMMFYerrFEGDRNPIKTNWGMHEFT 157
                       888899**********43312456678********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.08121172IPR003441NAC domain
SuperFamilySSF1019413.66E-2428165IPR003441NAC domain
PfamPF023653.0E-929157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGSGRGRRRW CPSTARTGTA CLSAATSSPR TLELFAILRC KLVCGQLPGA LNNVFEHIRI  60
LEFHPALLHE TYIGKEEDGY IYFFNRWQFA TKAGNKRRPT QVAKGGTWKA SSGSKTVRSK  120
KVGGIDIGQK LTMMFYERRF EGDRNPIKTN WGMHEFTKII DDSKNQKPGS PC*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8LNE1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g26240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g26240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0839431e-174AC083943.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0044A10, from chromosome 10, complete sequence.
GenBankAP0149661e-174AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613639.11e-83NAC transcription factor NAM-B2
RefseqXP_015651177.11e-83NAC transcription factor NAM-B2 isoform X1
TrEMBLQ8LNE11e-126Q8LNE1_ORYSJ; No apical meristem protein
STRINGOGLUM10G09010.12e-95(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Representative plantOGRP985338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-07NAC transcription factor-like 9