PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g26410.1
Common NameLOC107278079, Os10g0403800, OsJ_31454, OSJNBa0044A10.22, OSNPB_100403800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 89aa    MW: 9920.3 Da    PI: 9.3331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g26410.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.15e-0613551454
                      HHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHH CS
               HLH 14 driNsafeeLrellPkas..kapskKlsKaeiLekAveYIksL 54
                      d+iN+ +++L++llP++s  ++   +      L++ + YIksL
  LOC_Os10g26410.1 13 DEINELISKLQSLLPESSrrRGATSRSPATKLLKEMCSYIKSL 55
                      68**************887844444555566799999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-81379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-81376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSGRRASGRI TDDEINELIS KLQSLLPESS RRRGATSRSP ATKLLKEMCS YIKSLHREVD  60
DLSERLSELM ATMDSNSPQA DIIRSLLR*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8LNC7
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, young panicles, pistil, lemma and palea. Expressed at low levels in leaves. {ECO:0000269|PubMed:23136524}.
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g26410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g26410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8379421e-147CT837942.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015N03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613962.17e-56transcription factor ILI3-like
SwissprotA2X9L81e-32ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX01e-32ILI5_ORYSJ; Transcription factor ILI5
TrEMBLA0A0D3HDF72e-54A0A0D3HDF7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0BA882e-54A0A0E0BA88_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0EXJ42e-54A0A0E0EXJ4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0QYU42e-54A0A0E0QYU4_ORYRU; Uncharacterized protein
TrEMBLA2Z7292e-54A2Z729_ORYSI; Uncharacterized protein
TrEMBLI1QUB12e-54I1QUB1_ORYGL; Uncharacterized protein
TrEMBLQ8LNC72e-54Q8LNC7_ORYSJ; BHLH family protein, putative, expressed
STRINGOGLUM10G09100.13e-55(Oryza glumipatula)
STRINGOMERI10G06270.13e-55(Oryza meridionalis)
STRINGORUFI10G09690.13e-55(Oryza rufipogon)
STRINGOS10T0403800-003e-55(Oryza sativa)
STRINGORGLA10G0079400.13e-55(Oryza glaberrima)
STRINGOBART10G09290.13e-55(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Representative plantOGRP8216416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.13e-27bHLH family protein