PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g27390.1
Common NameLOC9269665, Os10g0414000, OSNPB_100414000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 544aa    MW: 56440.7 Da    PI: 7.5557
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g27390.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.39.9e-26191541127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLp.kkvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkd 89 
                       lp Gf F Ptd+el+   L++k  g++  +++++ +++++i++++P +L  k +k eek + yfFskr+  ++++kr+ r+++ g W+++g  
  LOC_Os10g27390.1  19 LPIGFYFAPTDQELL-AILEAKRLGRPlSRAHDAfFHDIRILDFHPAELYeKYAKDEEKGYfYFFSKREFPTSSKKRPLRVAEGGAWNSSGAV 110
                       699************.7799999999954445556**************83444445554458999999999999*****************9 PP

               NAM  90 kevlsk....kgelvglkktLvfykg..rapkgektdWvmheyr 127
                        +v+++    +g +vg kktLvf++    +++++kt+W ++e++
  LOC_Os10g27390.1 111 YKVVKSsksgGGYDVGHKKTLVFHQRfpGDKEAVKTNWAIQEFT 154
                       99999766666666**********7544667789********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-3212173IPR003441NAC domain
PROSITE profilePS5100531.42519174IPR003441NAC domain
PfamPF023659.5E-1320154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MAAPEDGEDK NFGKNKHGLP IGFYFAPTDQ ELLAILEAKR LGRPLSRAHD AFFHDIRILD  60
FHPAELYEKY AKDEEKGYFY FFSKREFPTS SKKRPLRVAE GGAWNSSGAV YKVVKSSKSG  120
GGYDVGHKKT LVFHQRFPGD KEAVKTNWAI QEFTRIIGPQ NEVPDLAVYR LYKMRKEGRE  180
TPADLAADEA AAAAAMNNRG QQASAAAMAL PPPATGLPGG RMMSMADKAN MASTSKAYGP  240
SKSSSSQLQQ DAAAAAAPPN AAGASNWAPR PCNCRECAPA AGHYGYFAAA AAMNNRGGQA  300
SAAAKALPLP APGLPGVRRM SMADKANMAS TSKAYATSQS SSSQLQQGAA AVAAPPNAAG  360
PSNWAPRPCN CRECAPAAGQ YGYFASMVPR PSLDRKGKGK APMDCAEQAG GGGGCHAEST  420
STPAPPKGAE YYGCSVAVED DDEELLKFLQ AMVRGEEVEG DGDHAMADER GPQQGSSPVA  480
AAAASGSAPA GHDGRRGSLQ GGHHGSSSPT SLAAAAATGD DVTSAASAGD DVSGSQQEDH  540
PAR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.633080.0panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XEN6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g27390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g27390
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2421580.0AK242158.1 Oryza sativa Japonica Group cDNA, clone: J075155G16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614025.10.0spidroin-2
TrEMBLQ7XEN60.0Q7XEN6_ORYSJ; No apical meristem protein
STRINGOS10T0414000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2202166
Representative plantOGRP985338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.15e-13NAC family protein