PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g30719.1
Common NameLOC4348738, Os10g0444100, OSNPB_100444100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 275aa    MW: 30813.1 Da    PI: 9.2542
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g30719.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07182229348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                        WT  E + lv++v ++G g+W+   r +     Rt  ++k++w+++l
  LOC_Os10g30719.1 182 HWTIKEVKNLVQGVSKHGVGRWTELKRDFFstSIRTSVHLKDKWRNLL 229
                       6****************************99989************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.625175233IPR017930Myb domain
SuperFamilySSF466894.08E-15177266IPR009057Homeodomain-like
SMARTSM007176.3E-4179231IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-10182230IPR009057Homeodomain-like
CDDcd116602.11E-20183230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEKAVAAACG WRKGLEEGEP EWEAMELEAA APAIFPADGG GGGVRRSPAA STIFLPDLLD  60
GSFLSDDDLS QMEDIFQPAH EDDIHHLLQG PQDEADLDKW LAGQSCSPAA EGSITVQTPT  120
YPILNLIDFI PKDGCKRGPR GARKRQTFPS RGARTRRAFP LQQLCFGTTR DKRCRLRKNN  180
DHWTIKEVKN LVQGVSKHGV GRWTELKRDF FSTSIRTSVH LKDKWRNLLK ACGIDFTSTA  240
KGKAQKTMLW PLDKRLTEQI IQLAYKHPYP RQKY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.464870.0flower| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329816680.0
Expression AtlasQ109M5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g30719.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g30719
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0716450.0AK071645.1 Oryza sativa Japonica Group cDNA clone:J023105M22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613839.10.0uncharacterized protein LOC4348738 isoform X2
TrEMBLQ109M50.0Q109M5_ORYSJ; Myb-like DNA-binding domain containing protein, expressed
STRINGOS10T0444100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.28e-16TRF-like 6