PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g38000.1
Common NameLOC107277951, Os10g0523900, OSNPB_100523900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 194aa    MW: 20435 Da    PI: 6.8039
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g38000.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.3e-183483155
               AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      + y+GVr++   g+Wv+eIr+       +  r++lg++ t+e+Aa+a++aa+++l+g
  LOC_Os10g38000.1 34 PVYRGVRFR--AGKWVSEIRElR-----KpSRIWLGTYATPEMAAAAYDAAALALRG 83
                      68*****96..5*********66.....68*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-123483IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-253592IPR001471AP2/ERF domain
PROSITE profilePS5103218.8613591IPR001471AP2/ERF domain
SMARTSM003806.2E-243597IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-183592IPR016177DNA-binding domain
CDDcd000181.77E-133693No hitNo description
PRINTSPR003671.2E-63647IPR001471AP2/ERF domain
PRINTSPR003671.2E-67393IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001059developmental stageJ bicellular pollen stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEQRAAAAAQ QRQGRRQSAA ACGIRRARAE TRHPVYRGVR FRAGKWVSEI RELRKPSRIW  60
LGTYATPEMA AAAYDAAALA LRGRGAALNF PDAARSRPAP ASASADDVRA AATAAAAAMA  120
HQEEDDDSRR QLEDGGGGGG VVDEDDVLEM PRLMVSMAEG LMISPPPVML GLQADGGGIM  180
DEGGGVVRLW DHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1233911272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8H099
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g38000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g38000
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0788940.0AC078894.11 Oryza sativa Japonica Group cultivar Nipponbare chromosome 10 clone OSJNBa0096G08 map E1363S, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613984.11e-133ethylene-responsive transcription factor ERF027
SwissprotQ9SJR09e-39ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLQ8H0991e-132Q8H099_ORYSJ; AP2 domain containing protein
STRINGOS10T0523900-001e-133(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-15ERF family protein