PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g03310.1
Common NameOs11g0127000, OSNPB_110127000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 289aa    MW: 32169.6 Da    PI: 8.2112
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g03310.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.75.3e-2848356127
               NAM  56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.........kgelvglkktLvfykgrapkgektdWvmheyr 127
                       +ew +Fs++d ky+tg r+nratk+gyWkatgkd+e+++          +++lvg+kktLvfy grapkg++t+Wvmhe+r
  LOC_Os11g03310.1   4 NEW-YFSRKDMKYPTGMRTNRATKEGYWKATGKDREIFKPaiyegssknNKQLVGMKKTLVFYMGRAPKGTRTNWVMHEFR 83 
                       455.6899*******************************99999999887888***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.9281110IPR003441NAC domain
SuperFamilySSF1019417.72E-323110IPR003441NAC domain
PfamPF023654.5E-12683IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGNNEWYFSR KDMKYPTGMR TNRATKEGYW KATGKDREIF KPAIYEGSSK NNKQLVGMKK  60
TLVFYMGRAP KGTRTNWVMH EFRPHANLHN HYPNLRLNPN EWVVCKVFHK KQGDEAINNQ  120
QQQPAVDQAD DDDIFQLDDI FADPSIYDFS NSSANILSAP PNNNAVHSSV SAGTTMTSTT  180
TASSFQHQPN CYSAPLQQHV SSWNNTPGAG GAHGIGSSYY NLQQQQQQAA MVKDLEDIIA  240
VPDYGTLLPS SNKGSSIRSA TAGVSQQNPL GVPQYKIENY GDHYISRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-24111168166NO APICAL MERISTEM PROTEIN
1ut4_B3e-24111168166NO APICAL MERISTEM PROTEIN
1ut7_A3e-24111168166NO APICAL MERISTEM PROTEIN
1ut7_B3e-24111168166NO APICAL MERISTEM PROTEIN
3swm_A4e-24111171169NAC domain-containing protein 19
3swm_B4e-24111171169NAC domain-containing protein 19
3swm_C4e-24111171169NAC domain-containing protein 19
3swm_D4e-24111171169NAC domain-containing protein 19
3swp_A4e-24111171169NAC domain-containing protein 19
3swp_B4e-24111171169NAC domain-containing protein 19
3swp_C4e-24111171169NAC domain-containing protein 19
3swp_D4e-24111171169NAC domain-containing protein 19
4dul_A3e-24111168166NAC domain-containing protein 19
4dul_B3e-24111168166NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567648860.0
Expression AtlasA0A0P0XYU9-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Predominantly expressed in developing vascular tissue of the leaves and roots, and in developing flowers. {ECO:0000269|PubMed:15654622}.
UniprotTISSUE SPECIFICITY: Expressed in phloem. {ECO:0000269|PubMed:15654622}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g03310.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g03310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235190.0AC123519.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence.
GenBankAC1235250.0AC123525.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence.
GenBankAK2882710.0AK288271.1 Oryza sativa Japonica Group cDNA, clone: J090017A22, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616089.10.0NAC domain-containing protein 77-like
SwissprotQ5CD171e-143NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A0P0XYU90.0A0A0P0XYU9_ORYSJ; Os11g0127000 protein (Fragment)
STRINGOS11T0127000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.25e-40NAC domain containing protein 80