PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os11g29870.1

Common Name

LOC4350545, Os11g0490900, OsJ_33930, OSNPB_110490900

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 243aa MW: 25857.2 Da PI: 9.3347

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g29870.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.4	1.5e-33	136	194	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d++vv++tYeg+H+h+ LOC_Os11g29870.1 136 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSRDETVVVTTYEGTHTHP 194 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.4E-35	121	194	IPR003657	WRKY domain
SuperFamily	SSF118290	8.5E-30	128	195	IPR003657	WRKY domain
PROSITE profile	PS50811	30.343	131	196	IPR003657	WRKY domain
SMART	SM00774	9.1E-40	136	195	IPR003657	WRKY domain
Pfam	PF03106	2.1E-27	137	194	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000122	Biological Process	negative regulation of transcription from RNA polymerase II promoter
GO:0010055	Biological Process	atrichoblast differentiation
GO:0032107	Biological Process	regulation of response to nutrient levels
GO:0043620	Biological Process	regulation of DNA-templated transcription in response to stress
GO:0048527	Biological Process	lateral root development
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009005	anatomy	root

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MENFPILFAT QPTSSSTSSS YHFMSSSSGS HDHRHHHGLQ AGGNGGGGGG SLSHGLFMGS 60 SSSSIRMEEL SNSKQAGDVV VDGGATRSPH GGDGDGAAGD DGGDAQAAAA GGRKKGEKKE 120 RRPRFAFQTR SQVDILDDGY RWRKYGQKAV KNNKFPRSYY RCTHQGCNVK KQVQRLSRDE 180 TVVVTTYEGT HTHPIEKSND NFEHILTQMH IYSGLTPSSA AHASSSSPLF PSAAAAASHM 240 FQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-27	127	195	8	76	Probable WRKY transcription factor 4
2lex_A	2e-27	127	195	8	76	Probable WRKY transcription factor 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.55827	5e-51	leaf\| root

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q2R432

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00506	DAP	Transfer from AT5G13080	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g29870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g29870

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108860	0.0	AK108860.1 Oryza sativa Japonica Group cDNA clone:002-152-B08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615223.1	1e-180	probable WRKY transcription factor 56
TrEMBL	A0A0E0J1Z1	1e-178	A0A0E0J1Z1_ORYNI; Uncharacterized protein
TrEMBL	Q2R432	1e-178	Q2R432_ORYSJ; Os11g0490900 protein
STRING	OS11T0490900-01	1e-179	(Oryza sativa)
STRING	ONIVA11G13150.1	1e-179	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	6e-55	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	LOC_Os11g29870.1
Entrez Gene	4350545

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]