PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g45850.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 260aa    MW: 28953.2 Da    PI: 7.9234
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g45850.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY711.7e-223698258
                      --SS-EEEEEEE--TT-SS-E...EEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY  2 dDgynWrKYGqKevkgsefpr...sYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                      dDg++WrKYGqK+v+g+ +p    +Y+rC+++   gC+++kkv+r++ dp +v+++Y+g H +
  LOC_Os11g45850.1 36 DDGFSWRKYGQKDVEGAMHPTtqsNYFRCAHKmttGCKARKKVQRTDGDPLMVDVVYKGVHSC 98
                      8****************99963337******9999**************************98 PP
2WRKY68.78.7e-22136196259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgy+W++YGqK++ g+++pr YYrC ++   gC+++k+ + ++ dp +++++Y+geH+++
  LOC_Os11g45850.1 136 DDGYSWKRYGQKNIFGANYPRCYYRCIHKtttGCTATKNAQATDGDPLLFDVVYHGEHTCD 196
                       8*************************877777***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-223099IPR003657WRKY domain
SuperFamilySSF1182902.62E-203398IPR003657WRKY domain
SMARTSM007743.5E-3235100IPR003657WRKY domain
PROSITE profilePS5081117.3853697IPR003657WRKY domain
PfamPF031064.5E-213698IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-24124196IPR003657WRKY domain
PROSITE profilePS5081120.461130198IPR003657WRKY domain
SuperFamilySSF1182902.09E-22131197IPR003657WRKY domain
SMARTSM007741.8E-31135197IPR003657WRKY domain
PfamPF031068.7E-22136196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGVLKVGAYI NLCILHNRKE PQMERRKVIR MSYTEDDGFS WRKYGQKDVE GAMHPTTQSN  60
YFRCAHKMTT GCKARKKVQR TDGDPLMVDV VYKGVHSCAG VHSDSQRSSA ASSKSNLRPT  120
KSMQVRASSK DVGPPDDGYS WKRYGQKNIF GANYPRCYYR CIHKTTTGCT ATKNAQATDG  180
DPLLFDVVYH GEHTCDLQST HSNDVEPIRP QSGLDDDMCT DDTTTVSTRH DSNTDASSIS  240
FQLDWTNCKD ESDGPPTTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-1436195568OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.738351e-178callus| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QZI7
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates during developmental leaf senescence. {ECO:0000269|PubMed:22268143}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g45850.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g45850
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1356441e-176AC135644.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0085H07, complete sequence.
GenBankAP0149671e-176AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126191e-176CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616376.21e-116probable WRKY transcription factor 53
SwissprotQ9SUP62e-21WRK53_ARATH; Probable WRKY transcription factor 53
TrEMBLQ2QZI70.0Q2QZI7_ORYSJ; WRKY DNA binding domain containing protein, expressed
STRINGORGLA11G0184200.11e-149(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3095334
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.18e-23WRKY family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  5. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]
  6. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]
  7. Chen X, et al.
    POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis.
    Elife, 2017.
    [PMID:27873573]
  8. Nie P, et al.
    Induced Systemic Resistance against Botrytis cinerea by Bacillus cereus AR156 through a JA/ET- and NPR1-Dependent Signaling Pathway and Activates PAMP-Triggered Immunity in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 238
    [PMID:28293243]
  9. Ren Y,Li Y,Jiang Y,Wu B,Miao Y
    Phosphorylation of WHIRLY1 by CIPK14 Shifts Its Localization and Dual Functions in Arabidopsis.
    Mol Plant, 2017. 10(5): p. 749-763
    [PMID:28412544]
  10. Sarkar S, et al.
    Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta.
    Planta, 2018. 247(1): p. 181-199
    [PMID:28913593]
  11. Crespo-Salvador Ó,Escamilla-Aguilar M,López-Cruz J,López-Rodas G,González-Bosch C
    Determination of histone epigenetic marks in Arabidopsis and tomato genes in the early response to Botrytis cinerea.
    Plant Cell Rep., 2018. 37(1): p. 153-166
    [PMID:29119291]
  12. Yuan N, et al.
    STRESS INDUCED FACTOR 2, a Leucine-Rich Repeat Kinase Regulates Basal Plant Pathogen Defense.
    Plant Physiol., 2018. 176(4): p. 3062-3080
    [PMID:29463771]