PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g47460.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 207aa    MW: 23288.5 Da    PI: 8.8025
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g47460.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-173377248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      gr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  LOC_Os11g47460.2 33 GRMSPKEEHLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 77
                      89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.21E-211282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-91239IPR009057Homeodomain-like
PROSITE profilePS500904.4261226IPR017877Myb-like domain
PROSITE profilePS5129425.5812781IPR017930Myb domain
SMARTSM007171.7E-143179IPR001005SANT/Myb domain
PfamPF002491.6E-153376IPR001005SANT/Myb domain
CDDcd001671.82E-113477No hitNo description
Gene3DG3DSA:1.10.10.604.2E-204078IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDRAGGPATG LNRTGKSCRL RWVNYLHPGL KHGRMSPKEE HLIIELHARW GNRWSRIARR  60
LPGRTDNEIK NYWRTHMRKK AQERRGDMSP SSSSSSLVYQ SCLLDTVPII SMDGGDIHDD  120
RSCMARVLKS TQSVMDGYTM DQIWKEIEAP GAPSLLGIDE GKDKACSNLP CPLLTSTMSD  180
YSCPEVFWKI DNEETRMLAT QSGYGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-17138137105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-16138191159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-16138191159MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-16138160128MYB TRANSFORMING PROTEIN
1mse_C5e-17138137105C-Myb DNA-Binding Domain
1msf_C5e-17138137105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.101740.0leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasH2KWK6
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g47460.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g47460
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0752590.0DQ075259.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS1-2 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617959.11e-146myb-related protein MYBAS1 isoform X2
SwissprotQ53NK61e-147MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLH2KWK61e-152H2KWK6_ORYSJ; Myb family transcription factor, putative, expressed
STRINGORUFI11G25190.11e-145(Oryza rufipogon)
STRINGOS11T0700500-011e-145(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-51myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]