PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g47620.1
Common NameLOC9269083, Os11g0702300, OSNPB_110702300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 164aa    MW: 18233.3 Da    PI: 5.8787
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g47620.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000247193123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C  Cg++F+++  L  H  +H
  LOC_Os11g47620.1 71 FECRTCGRRFPSHQALGGHRTSH 93
                      89*************99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.1E-107095IPR007087Zinc finger, C2H2
SMARTSM003550.0927193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3257198IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-771133No hitNo description
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
PfamPF139122.3E-9111135IPR007087Zinc finger, C2H2
SMARTSM003551.1111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDQQEDYTSD LQLELEEEED DNQLSQLAEL DVQLSLSLAC GSTTAMSSSG DEEDAEPRRR  60
RRDEEAAAAA FECRTCGRRF PSHQALGGHR TSHLRPTTNK RRPGPSKPLI HACEVCGLGF  120
QMGQALGGHM RRHRPRNIDL GHKQIVMPEI RPSSSLQLLD LFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.943470.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ53NL7
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g47620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g47620
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340450.0AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBankAK2433070.0AK243307.1 Oryza sativa Japonica Group cDNA, clone: J100055D19, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616383.11e-117zinc finger protein ZAT1
TrEMBLQ53NL71e-115Q53NL7_ORYSJ; Os11g0702300 protein
STRINGOS11T0702300-001e-116(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-16C2H2 family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]