PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g47630.1
Common NameLOC4351199, Os11g0702400, OsJ_34843, OSNPB_110702400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 171aa    MW: 18029.5 Da    PI: 10.677
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g47630.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000234567123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C  Cg++Fs+   L  H  +H
  LOC_Os11g47630.1 45 FQCRTCGRRFSTFQALGGHRTSH 67
                      89**********99998888877 PP
2zf-C2H218.45.9e-0699121123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C  Cgk+F +   L  H+r+H
  LOC_Os11g47630.1  99 HRCDMCGKVFATGQALGGHMRRH 121
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.0E-43768IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.2E-104469IPR007087Zinc finger, C2H2
SMARTSM003550.134567IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8664572IPR007087Zinc finger, C2H2
SuperFamilySSF576674.07E-94567No hitNo description
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SuperFamilySSF576674.07E-994121No hitNo description
PfamPF139123.0E-1298122IPR007087Zinc finger, C2H2
SMARTSM003550.002899121IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-499121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.47199121IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEVATNTATR SPVKLMLVLT LSPASKVIAK GGGGVKRVHL DGGAFQCRTC GRRFSTFQAL  60
GGHRTSHKRP RVRADGLDLL LGARPGKLGA GGASTPVVHR CDMCGKVFAT GQALGGHMRR  120
HRPLVSRNGT MSTTWTAAAA AAATMSGSSS EERDDDDDDD VHNYNFIHFL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.158740.0callus| leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329904350.0
Expression AtlasQ53NL6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g47630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g47630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340450.0AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBankAK0624910.0AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence.
GenBankAK1052260.0AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616529.11e-122zinc finger protein ZAT8
TrEMBLQ53NL61e-120Q53NL6_ORYSJ; Os11g0702400 protein
STRINGOS11T0702400-011e-121(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-22C2H2 family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]