PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g48000.1
Common NameLOC9271775, Os11g0707300, OsJ_34883, OSNPB_110707300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 246aa    MW: 27177 Da    PI: 7.2211
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g48000.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-055375123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C + F++   L  H+++H
  LOC_Os11g48000.1 53 YTCSFCQREFRSAQALGGHMNVH 75
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.66E-65079No hitNo description
PROSITE profilePS5015711.2615380IPR007087Zinc finger, C2H2
PfamPF139121.3E-55376IPR007087Zinc finger, C2H2
SMARTSM003550.00315375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEEQRGEEEW VMWGSAGRRR IIRQSASWEE QAFARDAAAN ANLGGCVWPP RFYTCSFCQR  60
EFRSAQALGG HMNVHRRDRA RLRQRQTSSS SSPSHQEEEA EAPQDQQAGP YYTSFSKPST  120
TSTDNTTCSN DILLLARDQE TIKKRVPRQQ VQVVADQDED EPAGRRYKRR RLGLVDQLPS  180
SCEGGDHHHQ VLIITPTTAA ASPSSIIASA SALVVGDQQH QQAGSVLDLE LRLGTSTPPK  240
AVVHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-124875229superman protein
2l1o_A1e-124875229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11623GRRRIIRQ
2167171KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.985870.0panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ53NV6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g48000.1
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g48000
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330080.0AC133008.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615827.10.0probable transcriptional regulator RABBIT EARS
TrEMBLA0A0D3HQB10.0A0A0D3HQB1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0J5L60.0A0A0E0J5L6_ORYNI; Uncharacterized protein
TrEMBLA2ZH370.0A2ZH37_ORYSI; Uncharacterized protein
TrEMBLQ53NV60.0Q53NV6_ORYSJ; Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From Arabidopsis Thaliana Superman Protein
STRINGOS11T0707300-000.0(Oryza sativa)
STRINGONIVA11G23290.10.0(Oryza nivara)
STRINGOBART11G23770.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174901111
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-15C2H2 family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]