PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os12g02420.2

Common Name

LOC9269857, Os12g0116400, OSNPB_120116400

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 223aa MW: 25076.8 Da PI: 8.6617

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os12g02420.2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	71.1	1.5e-22	42	103	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 dDg++WrKYG K+ +s+fpr YYrCt++ +Cp++k+v+++ ++dp ++ +tY ++H+++ LOC_Os12g02420.2 42 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTNDPPLFSVTYFNHHTCN 103 8*************************99999***8761679***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.8E-24	29	103	IPR003657	WRKY domain
SuperFamily	SSF118290	8.11E-23	33	104	IPR003657	WRKY domain
PROSITE profile	PS50811	15.996	36	105	IPR003657	WRKY domain
SMART	SM00774	2.2E-33	41	104	IPR003657	WRKY domain
Pfam	PF03106	4.4E-25	42	102	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0020048	anatomy	microspore
PO:0001009	developmental stage	D pollen mother cell meiosis stage
PO:0007130	developmental stage	sporophyte reproductive stage

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MALDSVPSYP SDLGSSRART PQQQRVRKEE RTWTTDTYAP YDDGHQWRKY GEKKLSNSNF 60 PRFYYRCTYK NDMKCPATKQ VQQKDTNDPP LFSVTYFNHH TCNSSPKIVG STPDSTVQSR 120 KAISICFNSH GKTGELPTFL SPSASLLSPS MQPYSSNQQP DMNTYSRQFH WADTSSSTSY 180 APVKMEADDY AEASASPSTT GALSRTLLPI GQSRCIEYFH FL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	5e-16	42	102	9	68	OsWRKY45
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.47146	0.0	callus\| leaf\| panicle\| root

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q2QYK0

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os12g02420.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os12g02420

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT832018	0.0	CT832018.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105A09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620027.1	1e-166	probable WRKY transcription factor 29 isoform X2
TrEMBL	Q2QYK0	1e-165	Q2QYK0_ORYSJ; Os12g0116400 protein
STRING	OS12T0116400-00	1e-166	(Oryza sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	2e-21	WRKY DNA-binding protein 55

Link Out ? help Back to Top
Phytozome	LOC_Os12g02420.2
Entrez Gene	9269857

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]