PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g02440.1
Common NameLOC4351327
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 193aa    MW: 22059.2 Da    PI: 6.0668
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g02440.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.85.1e-193498259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
              WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59
                      +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  LOC_Os12g02440.1 34 NDGHQWRKYGQKWISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCR 98
                      8*************************9887889********99876522226899*******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-221998IPR003657WRKY domain
PROSITE profilePS5081114.6652875IPR003657WRKY domain
SuperFamilySSF1182906.02E-202998IPR003657WRKY domain
SMARTSM007741.2E-283399IPR003657WRKY domain
PfamPF031064.3E-223498IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDNHNLEEEA KESVSKRRKN AEHTGSTVAQ APHNDGHQWR KYGQKWISRA KHSRSYYRCA  60
NSKVQGCPAT KTVQQMDSSG NGTSKLFNVD YYGQHTCRGD GIANPYVVDT AHHSMEPINQ  120
NECNSPTLEH EAHEVQDERF ENLCMVQNMP EYLIDFELER AFEFIVNSPL GSEHWTFDDS  180
IRCEHSPICI WG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.148820.0callus| flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154870150.0
Expression AtlasQ2QYJ7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g02440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g02440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1020930.0AK102093.1 Oryza sativa Japonica Group cDNA clone:J033083A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620022.11e-146probable WRKY transcription factor 46 isoform X1
RefseqXP_015620023.11e-146probable WRKY transcription factor 46 isoform X2
RefseqXP_015620024.11e-146probable WRKY transcription factor 46 isoform X3
RefseqXP_015620025.11e-146probable WRKY transcription factor 46 isoform X4
TrEMBLQ2QYJ71e-145Q2QYJ7_ORYSJ; WRKY DNA binding domain containing protein, expressed
STRINGOS11T0117400-001e-145(Oryza sativa)
STRINGOS12T0116600-011e-146(Oryza sativa)
STRINGONIVA11G01230.11e-145(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-16WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]