PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g10660.1
Common NameLOC4351769, Os12g0209200, OSNPB_120209200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family DBB
Protein Properties Length: 211aa    MW: 21629.8 Da    PI: 4.8508
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g10660.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.7e-07546641
          zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C+ +e+ e+   C  ++  lC+ C  + H+       Ht+v 
  LOC_Os12g10660.1  5 CDACEQAEAAVLCCADEAALCRRCDAAVHSAnrlagkHTRVA 46
                      *****************************6688999999876 PP
2zf-B_box25.72.3e-086499437
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                      ++C+ ++ek   +fC +++ llC++C ++ H    H
  LOC_Os12g10660.1 64 PTCDICQEKTGYFFCLEDRALLCRSCDVAVHTAtaH 99
                      79****************************955663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.783147IPR000315B-box-type zinc finger
SMARTSM003363.2E-8547IPR000315B-box-type zinc finger
CDDcd000215.36E-6547No hitNo description
PfamPF006432.4E-5546IPR000315B-box-type zinc finger
Gene3DG3DSA:3.30.40.102.1E-45396IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM003362.7E-1161108IPR000315B-box-type zinc finger
PROSITE profilePS501199.25761108IPR000315B-box-type zinc finger
PfamPF006432.0E-66499IPR000315B-box-type zinc finger
CDDcd000214.32E-56690No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKIGCDACEQ AEAAVLCCAD EAALCRRCDA AVHSANRLAG KHTRVALLLP SSSSAAAGDD  60
DHHPTCDICQ EKTGYFFCLE DRALLCRSCD VAVHTATAHA AAHRRFLITG VRIGGSVDAA  120
AAADVIVSPT SSSIAPAGSA SSNHAGAAGN NNGRSPAPVR FSGGDGGVEP EQQWPWSDVF  180
AADDDDDVSA AMEQCYYHGI SEPHSSSLTG *
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329778380.0
Expression AtlasQ2QW41-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g10660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g10660
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0678200.0AK067820.1 Oryza sativa Japonica Group cDNA clone:J013117D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618519.11e-151B-box zinc finger protein 23
TrEMBLQ2QW411e-150Q2QW41_ORYSJ; Os12g0209200 protein
STRINGOS12T0209200-011e-151(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.18e-34light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]