PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g18120.2
Common NameLOC4351978, OsJ_35760
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 529aa    MW: 57178 Da    PI: 6.5588
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g18120.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.7e-09109134126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ++++ C ++ ++G C++G +CkF+H+
  LOC_Os12g18120.2 109 PGEPDCTYYVKFGSCRFGMKCKFNHP 134
                       5789*********************8 PP
2zf-CCCH25.91.8e-08239261325
                       S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                       +e+C++++  G Ck+G  Ck+ H
  LOC_Os12g18120.2 239 QEECKYYSTPGGCKFGKACKYLH 261
                       699******************** PP
3zf-CCCH34.63.3e-11286310226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++++C++++rtG Cky  +CkF+H+
  LOC_Os12g18120.2 286 GEKECPYYMRTGSCKYATNCKFHHP 310
                       7899********************9 PP
4zf-CCCH19.91.3e-06433459127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C++f ++G+Ck+  +Ck++H++
  LOC_Os12g18120.2 433 PGQPECQHFVKSGFCKFRMKCKYHHPR 459
                       5789*********************96 PP
5zf-CCCH23.78.3e-08478503227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C ++ r+G Ck+G+ C ++H++
  LOC_Os12g18120.2 478 DQPVCTYYGRYGVCKFGPACAYNHPF 503
                       6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258108136IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-6110134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103236264IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4237263IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-6239261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4242262IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5284311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793284312IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-8286310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6287311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4290309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676432460IPR000571Zinc finger, CCCH-type
SMARTSM003560.028432459IPR000571Zinc finger, CCCH-type
SMARTSM003560.0081476503IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732476504IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5477504IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5478503IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MADADARAPP KSDPGATPIG SISPSSAAPA AGEDEVEVEV EVEEQLAGLA IADQGEELLL  60
PKPTGWEDGP VVVAGDEVSG GEKLPGEVAA AVGVEGAAAD SRPRFPRRPG EPDCTYYVKF  120
GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGGSNSSSNK ASSPDDEQAP KEEYGSYVPD  180
ISPEVDSLGF ADKGSASNLE NFKKYSYEII DVKKGRVEPK ELKVAKEKRK EFISEGSSQE  240
ECKYYSTPGG CKFGKACKYL HRDGKEGKTD AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK  300
YATNCKFHHP DPSNVASKDP QLEHENGDAP QQDVQGSSSQ PNASIWPDQR TVNEHHVPFI  360
APSPSYSAGM LPPQGMYPPP EWNGYHQVPL NPYYPPGVPF QHFPAAPINH PMYKAPEIPG  420
HQQVPSEEYP ERPGQPECQH FVKSGFCKFR MKCKYHHPRS PVPPAGALSP LGLPIKPDQP  480
VCTYYGRYGV CKFGPACAYN HPFNFSPVPA AGPPLLPAQY PTPGNYTL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.143120.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154881630.0
Expression AtlasB7F3T2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g18120.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g18120
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114980.0AK111498.1 Oryza sativa Japonica Group cDNA clone:J013000H23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620303.10.0zinc finger CCCH domain-containing protein 65 isoform X4
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLB7F3T20.0B7F3T2_ORYSJ; cDNA clone:J013000H23, full insert sequence
STRINGONIVA12G08230.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-58C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]