PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g29330.1
Common NameLOC4352203, Os12g0477400, OSNPB_120477400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 261aa    MW: 28012.5 Da    PI: 9.9389
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g29330.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.65.4e-4591441128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       lppGfrF+Ptdeelvv+yL++++ g++l+ +  i++v+++ ++P+dL p     +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+v
  LOC_Os12g29330.1   9 LPPGFRFRPTDEELVVHYLRRRALGSPLPPAVDIPDVRLLAHDPSDLlP--PGWSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKPV 99 
                       79*************************998556**************43..3447899*********************************** PP

               NAM  93 lsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++            +vg+k++Lvfy+g+ p+g+ktdWvmheyrl
  LOC_Os12g29330.1 100 AVSvaaaprsqaAAVVVGMKRSLVFYRGKPPTGKKTDWVMHEYRL 144
                       *987777765444445***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-495176IPR003441NAC domain
PROSITE profilePS5100548.9089176IPR003441NAC domain
PfamPF023657.9E-2710144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
METTAAKKLP PGFRFRPTDE ELVVHYLRRR ALGSPLPPAV DIPDVRLLAH DPSDLLPPGW  60
SEQERYFFTC KEAKYVKGRR ANRATGAGYW KATGKEKPVA VSVAAAPRSQ AAAVVVGMKR  120
SLVFYRGKPP TGKKTDWVMH EYRLAGAGLA PCRRAATADH PARPAEGWVL CRVFRKKGSA  180
AASTASPTAD ADDDDATTER ADDAAAGVRF IDFFARADAR RRRAASPVSS SCVTDASAEH  240
CREQETTSRN GGAAAGDASD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-3921798171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.231100.0callus| leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160126090.0
Expression AtlasQ2QQZ6-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g29330.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g29330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432440.0AK243244.1 Oryza sativa Japonica Group cDNA, clone: J100046N20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618303.10.0NAC domain-containing protein 83
SwissprotQ9FY933e-52NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0E0JA850.0A0A0E0JA85_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QXV40.0A0A0E0QXV4_ORYRU; Uncharacterized protein
TrEMBLQ2QQZ60.0Q2QQZ6_ORYSJ; No apical meristem protein, expressed
STRINGORUFI10G07040.10.0(Oryza rufipogon)
STRINGOS12T0477400-010.0(Oryza sativa)
STRINGONIVA12G11920.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-50NAC domain containing protein 83
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]