PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g32400.1
Common NameLOC107276670, OsJ_36241
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 199aa    MW: 22598.2 Da    PI: 4.6037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g32400.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-101241631054
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++RR+riN+++  L+el+P+      +K++ +++Le+A++Y+k L
  LOC_Os12g32400.1 124 KNRRQRINERLRILQELIPNG-----TKVDISTMLEEAIQYVKFL 163
                       89*****************97.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.615114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-13117178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-11118174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-9120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-10123168No hitNo description
PfamPF000109.1E-8124163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MECSSFEAIC NESEMIAHLQ SLFWSSSDAD PCFGSSSFSL ISSEGYDTMT TEFVNSSTNV  60
CFDYQDDSFV SAEETTIGNK RKVQMDTENE LMTNRSKEVR TKMSVSKACK HSVSAESSQS  120
YYAKNRRQRI NERLRILQEL IPNGTKVDIS TMLEEAIQYV KFLHLQIKLL SSDEMWMYAP  180
LAFDSGNNRL YQNSLSQE*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QQ32
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g32400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g32400
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317591e-175AL731759.2 Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-175AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126201e-175CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619477.21e-145transcription factor SPATULA isoform X1
SwissprotQ3E7L77e-34BH139_ARATH; Transcription factor bHLH139
TrEMBLA0A0E0RHR41e-145A0A0E0RHR4_ORYRU; Uncharacterized protein
TrEMBLQ2QQ321e-145Q2QQ32_ORYSJ; Helix-loop-helix DNA-binding domain containing protein
STRINGORUFI12G14590.11e-146(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145082123
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43175.14e-36bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]