PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g37410.1
Common NameLOC9271102, OsOBF1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 146aa    MW: 16142.1 Da    PI: 6.7906
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g37410.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.49.9e-162484363
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                      + +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+a N +   +++e+  ++a++++e+
  LOC_Os12g37410.1 24 DHRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVLARASEIAGQYARVEQEN 84
                      679*****************************************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-172286IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.2432487IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.6E-102470No hitNo description
PfamPF001702.7E-122584IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.75E-102680No hitNo description
CDDcd147024.40E-152778No hitNo description
PROSITE patternPS0003602944IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006971Biological Processhypotonic response
GO:0009267Biological Processcellular response to starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MSSSSLSPAG SSDGDSAGVV VAADHRREKR RLSNRESARR SRLRKQQHLD ELVQEVARLQ  60
ADNARVLARA SEIAGQYARV EQENTVLRAR AAELGDRLRS VNEVLRVVEE FSGVAMDIQE  120
ECPPDDPLLR PWQIPCPAAA HMLQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13844RRSRLRK
23845RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.690880.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO710610970.0
Expression AtlasQ4H4C4-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Roots and shoots of young plants, and basal portion of leaves.
Functional Description ? help Back to Top
Source Description
UniProtMay contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00419DAPTransfer from AT3G62420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g37410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g37410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1852800.0AB185280.1 Oryza sativa Japonica Group OsOBF1 mRNA for bZIP protein, complete cds.
GenBankAL9350720.0AL935072.4 Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619873.11e-100ocs element-binding factor 1
SwissprotP240682e-77OCS1_MAIZE; Ocs element-binding factor 1
TrEMBLA0A0D3HVP51e-98A0A0D3HVP5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0BU261e-98A0A0E0BU26_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0CHQ31e-98A0A0E0CHQ3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0JB711e-98A0A0E0JB71_ORYNI; Uncharacterized protein
TrEMBLA0A0E0RIR11e-98A0A0E0RIR1_ORYRU; Uncharacterized protein
TrEMBLA2ZLM81e-98A2ZLM8_ORYSI; Uncharacterized protein
TrEMBLI1R7741e-98I1R774_ORYGL; Uncharacterized protein
TrEMBLQ4H4C41e-98Q4H4C4_ORYSJ; BZIP protein
STRINGOGLUM12G17310.12e-99(Oryza glumipatula)
STRINGOMERI02G09370.12e-99(Oryza meridionalis)
STRINGORUFI12G17520.12e-99(Oryza rufipogon)
STRINGONIVA12G14510.12e-99(Oryza nivara)
STRINGORGLA11G0215100.12e-99(Oryza glaberrima)
STRINGORGLA12G0138000.12e-99(Oryza glaberrima)
STRINGOBART12G15770.12e-99(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Representative plantOGRP5511678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.11e-35basic region/leucine zipper motif 53
Publications ? help Back to Top
  1. Shimizu H, et al.
    LIP19, a basic region leucine zipper protein, is a Fos-like molecular switch in the cold signaling of rice plants.
    Plant Cell Physiol., 2005. 46(10): p. 1623-34
    [PMID:16051676]
  2. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  3. Singh K, et al.
    OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development.
    Plant Cell, 1990. 2(9): p. 891-903
    [PMID:2152133]