PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g40920.4
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 165aa    MW: 18771.5 Da    PI: 9.4257
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g40920.4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.93.9e-1781136459
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                        kr+rr+ +NRe+ArrsR+RK+a +  Le  v +L +eN +L+k+l+ +++++++ 
  LOC_Os12g40920.4  81 AKRTRRMLSNRESARRSRKRKQAHLNDLESQVSQLRSENASLQKRLSDMTQKYKQS 136
                       69*****************************************7777777776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-1874142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.04780143IPR004827Basic-leucine zipper domain
PfamPF001701.9E-1481135IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-1382134No hitNo description
Gene3DG3DSA:1.20.5.1702.8E-1482135No hitNo description
CDDcd147021.74E-1683133No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MAFQLEAKLQ ESSLGYLNLQ ASDTSQLVSQ DSFNGYGSTR VTNSNAIHED DDQGKPANSG  60
TSKEQSDDDG DLEEDTDPVN AKRTRRMLSN RESARRSRKR KQAHLNDLES QVSQLRSENA  120
SLQKRLSDMT QKYKQSTTEY GNLQDDMNAM RRKVWRCKKR NKTF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100RRSRKRK
294101RRSRKRKQ
396101SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.264377e-83leaf| panicle| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977293727e-83
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g40920.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g40920
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879810.0AK287981.1 Oryza sativa Japonica Group cDNA, clone: J075085P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620823.11e-113light-inducible protein CPRF2 isoform X4
SwissprotQ6H5002e-26RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A0N7KUB61e-106A0A0N7KUB6_ORYSJ; Os12g0601800 protein
STRINGOS12T0601800-011e-107(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-17basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]