PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os12g40960.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

ERF

Protein Properties

Length: 139aa MW: 14755.1 Da PI: 6.7139

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os12g40960.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	23.7	1.2e-07	5	31	29	55
AP2 29 krfslgkfgtaeeAakaaiaarkkleg 55 r ++g+f+taeeAa a++a +++l+g LOC_Os12g40960.1 5 SRSWVGTFDTAEEAAWAYDAVARRLYG 31 567*********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	11.825	1	39	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-5	1	45	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.17E-11	3	39	IPR016177	DNA-binding domain
CDD	cd00018	1.30E-13	3	40	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.9E-14	3	39	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MIKGSRSWVG TFDTAEEAAW AYDAVARRLY GPNARTNFRI PPPPVAPLLP APAVANKKMD 60 SKRKKPVVVA EMVAPAGVEP AAGEMAPVLL GNALEATNGW EFEPYSCMGL VVGGAVYNFA 120 DEPALVEKAF VVPFRNPL*

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q2QMJ3

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os12g40960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os12g40960

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL837528	0.0	AL837528.5 Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006664718.2	9e-16	PREDICTED: dehydration-responsive element-binding protein 1B-like
TrEMBL	Q2QMJ3	5e-93	Q2QMJ3_ORYSJ; AP2 domain containing protein
STRING	OMERI12G12700.1	7e-61	(Oryza meridionalis)
STRING	OMERI12G12760.1	2e-60	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15615	10	14
Representative plant	OGRP6	16	1718

Link Out ? help Back to Top
Phytozome	LOC_Os12g40960.1

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]