PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os12g43790.1

Common Name

LOC9272516, Os12g0634500, OSNPB_120634500

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 169aa MW: 17921.3 Da PI: 11.5446

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os12g43790.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	60	108	1	49
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 e++++r rr+++NRe+ArrsR+RK+ ++eL+ k+ +L a ++L +l LOC_Os12g43790.1 60 EERRRRLRRRISNRESARRSRARKQRHLDELRAKASALRATSRDLVARL 108 68899**********************************9999988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-6	56	109	No hit	No description
SMART	SM00338	2.1E-7	58	124	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.8E-7	60	108	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.53	62	108	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.88E-8	64	109	No hit	No description
PROSITE pattern	PS00036	0	67	82	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MAGLPFPSDS DTALEAFLAD IGFGAPCPEA APAPSPSHPD TTAAAATDEP VMAGDDQADE 60 ERRRRLRRRI SNRESARRSR ARKQRHLDEL RAKASALRAT SRDLVARLRG ARARAALVAL 120 TNAQLRDEAG KLALRLAAAR RVIALRQLYS AAAAGGGFEM QALASLIA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	83	RRSRARKQ

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q2QLP2

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os12g43790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os12g43790

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL831809	0.0	AL831809.3 Oryza sativa chromosome 12, . BAC OJ1268_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619047.1	1e-111	ocs element-binding factor 1
TrEMBL	A0A0E0RKF6	1e-109	A0A0E0RKF6_ORYRU; Uncharacterized protein
TrEMBL	Q2QLP2	1e-109	Q2QLP2_ORYSJ; BZIP transcription factor family protein, expressed
STRING	ORUFI12G22190.1	1e-110	(Oryza rufipogon)
STRING	OS12T0634500-00	1e-110	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15125	19	19

Link Out ? help Back to Top
Phytozome	LOC_Os12g43790.1
Entrez Gene	9272516

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]