PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G00520.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 210aa    MW: 22850.9 Da    PI: 10.1009
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G00520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.7e-093483554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      +e+ErrRR++++    +L +l+Pk    +++  +  + + +A  YIk+L
  LPERR01G00520.1 34 RKEMERRRRQDMKGLCLKLASLIPKEHYSKGGMRTQLSSVDEAAAYIKKL 83
                     579**********************76899999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.6452983IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-93392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-63583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-93598IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-63589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEKGGSSSSS RRRSRATVST SSGSVSSTAA AAERKEMERR RRQDMKGLCL KLASLIPKEH  60
YSKGGMRTQL SSVDEAAAYI KKLKERVDEL PHRRSIAMGN GGVAISPSTS GSGGSSEDVI  120
TGEKTVLEVR QHVQEGSSSL DVVLICSVER PVKFHEVITV LEEEGAEIVH ANFSVAAHKI  180
YYTIFSRAFS SRIGIEASRI TERLRALVIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G00520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028455e-44AP002845.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0482C06.
GenBankAP0149575e-44AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647782.11e-68transcription factor bHLH167 isoform X2
TrEMBLA0A0D9UVV91e-147A0A0D9UVV9_9ORYZ; Uncharacterized protein
STRINGLPERR01G00520.11e-148(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.14e-14bHLH family protein