PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G00530.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 220aa    MW: 23773.9 Da    PI: 10.2659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G00530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.1e-0931104455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC.........................TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkas......................kapskKlsKaeiLekAveYIksLq 55 
                        + +E++RR +++    +L +l+P++                       + +++  +  + Le+A  YIk+L+
  LPERR01G00530.1  31 ERKDVEKNRRLHMKGLCLKLSSLIPPPAaatsprrhhqhhqnlystssppSSTKETATQLDHLEQAAAYIKQLK 104
                      56899*********************666*******************87666677****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.52127103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-1129117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-829116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-631103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKSRKNTSTS SNSGGKCYSS SSGGGGQSKM ERKDVEKNRR LHMKGLCLKL SSLIPPPAAA  60
TSPRRHHQHH QNLYSTSSPP SSTKETATQL DHLEQAAAYI KQLKGRIDDL KKRKQQATSL  120
TSSSNGGKQA GGMPVVEVRC QEGTLDVVVV REAAAGDGER SVRLHEVIAV LEEEGAEVVN  180
ASFSVVGDKI FYTLHSQALC SRIGLDASRV SHRLRSLLLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G00530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622948.11e-97transcription factor bHLH168
TrEMBLA0A0D9UVW01e-159A0A0D9UVW0_9ORYZ; Uncharacterized protein
STRINGLPERR01G00530.11e-160(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.12e-16bHLH family protein