PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G00690.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 279aa    MW: 29293.9 Da    PI: 7.568
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G00690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09196239755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ + RR+ri +++  L++l+P+      +K++ +++LekA++Y+k Lq
  LPERR01G00690.1 196 AAAKVRRERISERLKVLQDLVPNG-----TKVDLVTMLEKAINYVKFLQ 239
                      56799*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.907189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-13190249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.18E-12192243No hitNo description
Gene3DG3DSA:4.10.280.101.2E-11194247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6197239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAAQASSKRA MAAPREMMYD DDEASMPLEL FGYHGGNGGC VDADYYYSWS GSSSSSSSSV  60
LSFDQAAAGG GCGRQQLAFH HSITGAGDDE CAMWMDAAAG MVVDHHPSVA GHNFGFVSSP  120
AGSPAAEMGI EIHDSSVVSK PPATAKTAQK RSCPPGGEVR AAGKKQCRKG SKGSKAASAP  180
APAPALTKDK DQPQSAAAKV RRERISERLK VLQDLVPNGT KVDLVTMLEK AINYVKFLQL  240
QVKVLATDEF WPAQGGKAPE LSQVKDALDA ILSSQHPNK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G00690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085871e-123AK108587.1 Oryza sativa Japonica Group cDNA clone:002-146-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643664.11e-114PREDICTED: transcription factor bHLH81-like
TrEMBLA0A0D9UVY80.0A0A0D9UVY8_9ORYZ; Uncharacterized protein
STRINGLPERR01G00690.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.15e-46ROOT HAIR DEFECTIVE6