PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G03590.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 254aa    MW: 27880.2 Da    PI: 9.7022
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G03590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.5e-1169113554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+e+ErrRR+riN  +++Lr+++P       k ++Ka+ L  +v+ +k+L
  LPERR01G03590.1  69 HSEAERRRRERINAHLSTLRRMVPDT-----KQMDKATLLASVVDQVKDL 113
                      9************************9.....67*********99999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.79964113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1368129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-969113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-1369123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1170119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.5E-4158220No hitNo description
CDDcd048732.65E-6158222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAECQPLQLQ EGKKLKELQP YDGCDPSVYR GPILLPRQAS STPPAVLPEM SSSSGSGRSA  60
TEARALKIHS EAERRRRERI NAHLSTLRRM VPDTKQMDKA TLLASVVDQV KDLKRKASEI  120
TKQMPLPPET NEVSIECFTG DAATAIAGNH KTLYIKASIS CDDRPDLIAG LTQAFHGLRL  180
RTVRAEMISL GGRVQHVFIL CKEEGIAGVS LKSLKEAVRQ ALAKVASPEL VYGSSPFHSK  240
RQRILESHCS IMSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G03590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8315680.0CT831568.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN107N12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623162.11e-152putative transcription factor bHLH107
TrEMBLA0A0D9UX250.0A0A0D9UX25_9ORYZ; Uncharacterized protein
STRINGLPERR01G03590.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-31bHLH family protein