PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G03690.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 92aa    MW: 10379.7 Da    PI: 5.232
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G03690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.86.8e-173283354
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54
                     k+++++ eq ++Le+ F+ ++++  e+++ LA+ lgL+ rqV vWFqNrRa+
  LPERR01G03690.1 32 KKRRLSVEQERALERSFKVENKLEPERKAWLARDLGLQPRQVAVWFQNRRAR 83
                     456899*********************************************8 PP
2HD-ZIP_I/II86.92.7e-283184154
      HD-ZIP_I/II  1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54
                     ekkrrls eq ++LE+sF+ e+kLeperK+ lar+LglqprqvavWFqnrRAR 
  LPERR01G03690.1 31 EKKRRLSVEQERALERSFKVENKLEPERKAWLARDLGLQPRQVAVWFQNRRARG 84
                     69***************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-171783IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-173081IPR009057Homeodomain-like
SMARTSM003891.0E-143091IPR001356Homeobox domain
PROSITE profilePS5007114.8193187IPR001356Homeobox domain
PfamPF000463.1E-143283IPR001356Homeobox domain
CDDcd000861.62E-143283No hitNo description
PRINTSPR000319.8E-65867IPR000047Helix-turn-helix motif
PRINTSPR000319.8E-66783IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MLNSSDDGYG GVGMEGEVDA EDEMMACGGG EKKRRLSVEQ ERALERSFKV ENKLEPERKA  60
WLARDLGLQP RQVAVWFQNR RARGGLQLLA WA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G03690.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1457282e-96AF145728.1 Oryza sativa homeodomain leucine zipper protein (Oshox4) mRNA, complete cds.
GenBankAK0997102e-96AK099710.1 Oryza sativa Japonica Group cDNA clone:J013077J22, full insert sequence.
GenBankAK1054842e-96AK105484.1 Oryza sativa Japonica Group cDNA clone:001-127-B05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660730.13e-42PREDICTED: homeobox-leucine zipper protein HOX4 isoform X2
RefseqXP_015612509.13e-42homeobox-leucine zipper protein HOX4
RefseqXP_015696875.12e-42PREDICTED: homeobox-leucine zipper protein HOX4 isoform X1
SwissprotQ6K4982e-43HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH372e-43HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLA0A0D9UX366e-59A0A0D9UX36_9ORYZ; Uncharacterized protein
STRINGLPERR01G03690.11e-59(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.14e-24homeobox protein 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]