PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G04800.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 196aa    MW: 20684.7 Da    PI: 10.8185
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G04800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF702.2e-221863146
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                     k ien+  r+vtfskRr g++KKA+ELS+LC+a vav+ fs+ g+ 
  LPERR01G04800.1 18 KLIENTNSRHVTFSKRRSGLFKKASELSTLCGAAVAVVAFSQAGRP 63
                     569***************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-281069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.1791070IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-241180IPR002100Transcription factor, MADS-box
CDDcd002663.19E-271185No hitNo description
PRINTSPR004044.2E-191232IPR002100Transcription factor, MADS-box
PfamPF003192.2E-242066IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-193247IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-194768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVGPSGRSSK GKKEIEIKLI ENTNSRHVTF SKRRSGLFKK ASELSTLCGA AVAVVAFSQA  60
GRPFAFLSDP TADSLLRRRS SLVVTSCAGG EEVDAMRRAA EEAAARHAAE KARMSDAADK  120
IVAAAAAAGS AMWWESAGVE ALGEAELAVL DVALRRLKGD VCHRLSNAGG VASARRRRRG  180
SSSLSLKLAF CMLHIT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G04800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642334.18e-42agamous-like MADS-box protein AGL62
TrEMBLA0A0D9UXH91e-135A0A0D9UXH9_9ORYZ; Uncharacterized protein
STRINGLPERR01G04800.11e-135(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.18e-17AGAMOUS-like 29