PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G05040.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 260aa    MW: 27655.2 Da    PI: 10.0905
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G05040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.5e-32183241159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  LPERR01G05040.1 183 LDDGYKWRKYGQKVVKNTHHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 241
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-33168241IPR003657WRKY domain
SuperFamilySSF1182901.7E-28175242IPR003657WRKY domain
PROSITE profilePS5081129.241178243IPR003657WRKY domain
SMARTSM007741.7E-36183242IPR003657WRKY domain
PfamPF031061.0E-24184240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MFPSPGRAVM ALAHHAAAAA AAAAAPPPCT PTAAMPPSTT SATTIAFSFQ PSPPTGALPH  60
HHHHHHHGDI LGYHHPTISS SSTTATIHGA AAAIVPPPRS SPPHPWSCEE GDRGKGAAAA  120
VMGINAAATD KAGGGGVQQQ PHQLGIGAVR MKKAGGGGGG GKARRKVREP RFCFKTMSDV  180
DVLDDGYKWR KYGQKVVKNT HHPRSYYRCT QDNCRVKKRV ERLAEDPRMV ITTYEGRHVH  240
SPSRDDDDAA RATAEMTFIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25174240874Probable WRKY transcription factor 4
2lex_A3e-25174240874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G05040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087551e-151AK108755.1 Oryza sativa Japonica Group cDNA clone:002-150-F11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818604.11e-81probable WRKY transcription factor 13
TrEMBLA0A0D9UXK90.0A0A0D9UXK9_9ORYZ; Uncharacterized protein
STRINGLPERR01G05040.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.15e-46WRKY DNA-binding protein 13